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Autophagy [JOURNAL]

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Integrated clinical and computational data-based repurposing of econazole as a novel autophagic activator in ULK1-related Parkinson disease.

Zhang J, Jin W, Fu Y … +13 more , Zhen Y, Chen Y, Liu W, Huang W, Wang Z, Zhu HP, Yang QQ, Zhan G, Zhao Q, Peng C, Zhang L, Han B, Liu B

Autophagy · 2026 May · PMID 42112758 · Publisher ↗

Parkinson disease (PD), the second most common neurodegenerative disorder, is pathologically linked to dysregulated autophagy, a conserved lysosomal degradation pathway. Current conventional PD therapies are often limite... Parkinson disease (PD), the second most common neurodegenerative disorder, is pathologically linked to dysregulated autophagy, a conserved lysosomal degradation pathway. Current conventional PD therapies are often limited by significant side effects, underscoring the demand for alternative treatment strategies. Drug repurposing of FDA-approved compounds represents a promising approach to address this unmet clinical need. Here, by integrating clinical data analysis, we identified an association between autophagy impairment and specific PD patient subtypes, suggesting that ULK1-dependent autophagy activation may offer therapeutic benefit. Through systematic screening for autophagy induction and neuroprotective activity, we identified econazole, a known imidazole antifungal, as a promising candidate. Econazole exhibited robust therapeutic effects across multiple PD models, including MPTP-induced zebrafish and mouse models, as well as SNCA mutant mouse models. Notably, its efficacy was dependent on functional autophagy, as autophagy inhibition abrogated its beneficial effects. Mechanistically, econazole activated ULK1, enhanced autolysosome formation, and promoted clearance of SNCA aggregates. Mouse brain microarray analysis indicated that econazole-activated ULK1 suppresses MAP3K12/DLK-MAPK8/JNK-MAPK9/JNK2-mediated neuronal apoptosis. Further phosphoproteomic profiling uncovered a novel ULK1-HSPA8/Hsc70 interaction that promotes LAMP1 and LAMP2 activation and enhances lysosomal function. This ULK1-HSPA8 complex additionally activated the BECN1 (beclin 1) complex to facilitate autophagosome formation. Together, our findings highlight a clinical data-guided drug repurposing approach that identifies econazole as a potent autophagy activator with therapeutic efficacy in ULK1-linked PD models, opening new avenues for PD treatment.: 3-MA: 3-methyladenine; ACTB: actin beta; ATG: autophagy related; AUC: area under the curve; BafA1: bafilomycin A1; BECN1: beclin 1; CMA: chaperone-mediated autophagy; DA: dopamine; DOPAC: 3,4-dihydroxyphenylacetic acid; Econ: econazole; GFP: green fluorescent protein; HEK-293T: human embryonic kidney 293T; HSPA8: heat shock protein 8 family A (Hsp70) member 8; HVA: homovanillic acid; JUN: Jun proto-oncogene, AP-1 transcription factor subunit; KSEA: kinase-substrate enrichment analysis; LAMP: lysosome associated membrane protein; MAP1LC3/LC3: microtubule associated protein 1 light chain 3; MAP2K: mitogen-activated protein kinase kinase; MAP3K12: mitogen-activated protein kinase kinase kinase 12; MAPK: mitogen-activated protein kinase; MPP+: 1-methyl-4-phenylpyridinium; MPTP: 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine; PD: Parkinson disease; RB1CC1: RB1 inducible coiled-coil 1; RFP: red fluorescent protein; RMSD: root mean square deviation; SEM: standard error of the mean; SNCA: synuclein alpha; SQSTM1: sequestosome 1; SYP: synaptophysin; TFEB: transcription factor EB; TH: tyrosine hydroxylase; ULK1: unc-51 like autophagy activating kinase 1; WT: wild-type.

Stub1 promotes chaperone-mediated autophagy to suppress antiviral immunity.

Liu H, Huang L, Weng C

Autophagy · 2026 May · PMID 42112744 · Publisher ↗

The E3 ubiquitin ligase Stub1 (CHIP) is a core regulator of protein homeostasis and antiviral innate immunity, with established roles in targeting RIG‑I and MAVS for proteasomal or autophagic degradation. Here, we summar... The E3 ubiquitin ligase Stub1 (CHIP) is a core regulator of protein homeostasis and antiviral innate immunity, with established roles in targeting RIG‑I and MAVS for proteasomal or autophagic degradation. Here, we summarize our recent work revealing that Stub1 negatively regulates type I interferon (IFN‑I) production by driving chaperone‑mediated autophagy (CMA)-dependent degradation of TBK1. Stub1 directly interacts with TBK1 and catalyzes K27‑linked polyubiquitination at lysine 344 (K344) of TBK1, which enables recognition by the CMA chaperone HSC70 via a conserved KFDKQ CMA recognition motif. Subsequently, ubiquitinated TBK1 is delivered to lysosomes via HSC70 and the lysosomal membrane protein LAMP2A for degradation. This process is independent of macroautophagy and the ubiquitin - proteasome system. Myeloid‑specific Stub1 knockout mice show enhanced IFN‑I responses, lower viral loads, and improved survival rates upon viral infection. This study defines a Stub1-CMA signaling axis that fine‑tunes antiviral immunity and expands the regulatory scope of ubiquitin codes in selective protein degradation pathways.

Generation of live attenuated influenza vaccine through selective autophagy.

Hao J, Si L

Autophagy · 2026 May · PMID 42108648 · Publisher ↗

Manipulating viral protein stability and degradation is a promising strategy to conditionally regulate viral replication, thereby converting viruses into live whole-virion vaccines. Recently, we developed a live attenuat... Manipulating viral protein stability and degradation is a promising strategy to conditionally regulate viral replication, thereby converting viruses into live whole-virion vaccines. Recently, we developed a live attenuated vaccine approach based on the autophagy-lysosomal degradation pathway. By incorporating an autophagosome-targeting motif (ATM) into the influenza A virus genome, we generated an autophagy-targeting (AUTOTAR) virus that is highly attenuated in conventional cells but retains efficient replication capacity in engineered production cells. Despite this attenuation, the AUTOTAR virus elicits strong humoral, mucosal, and cellular immune responses and confers complete protection against both homologous and heterologous viral challenges. These findings establish selective autophagy as a rational and tunable strategy for live vaccine design.

Liver-originated selective autophagy of BTD by alectinib underlies concurrent hepatotoxicity and dermatotoxicity.

Huang X, Zhang S, Mu Y … +9 more , Zhou Y, Chen X, Xia B, Xu Z, Yang X, Yang B, He Q, Yan H, Luo P

Autophagy · 2026 May · PMID 42107012 · Publisher ↗

Alectinib serves as an indispensable treatment for ALK (ALK receptor tyrosine kinase)-positive non-small-cell lung cancer (NSCLC), yet its hepatotoxicity and dermatotoxicity pose significant clinical concerns due to poor... Alectinib serves as an indispensable treatment for ALK (ALK receptor tyrosine kinase)-positive non-small-cell lung cancer (NSCLC), yet its hepatotoxicity and dermatotoxicity pose significant clinical concerns due to poorly understood mechanisms. This study demonstrated that alectinib-induced dermatotoxicity was secondary to hepatotoxicity. Integrated multi-omics analysis revealed that alectinib triggered excessive macroautophagic/autophagic degradation of hepatic BTD (biotinidase), causing systemic biotin deficiency that drove both hepatocyte apoptosis and skin barrier dysfunction. Mechanistically, we discovered increased phosphorylation of NBR1 at Ser656, a previously uncharacterized site, which conferred protein stability and contributed to selective BTD degradation. Importantly, exogenous biotin supplementation concurrently mitigated alectinib-induced hepatotoxicity and dermatotoxicity, providing a strategy for safer clinical application. These results uncovered a novel paradigm in drug-induced multi-organ toxicity, in which dysregulated inter-organ crosstalk served as a central mechanistic element.: AAV: adeno-associated virus; ALK: ALK receptor tyrosine kinase; BTD: biotinidase; c-CASP3: cleaved CASP3; c-PARP: cleaved poly(ADP-ribose) polymerase; CQ: chloroquine; DAPI: 4',6-diamidino-2-phenylindole; DHE: dihydroethidium; ELISA: enzyme-linked immunosorbent assay; GOT1/AST: glutamic-oxaloacetic transaminase 1; GPT/ALT: glutamic--pyruvic transaminase; GSEA: gene set enrichment analysis; H&E: hematoxylin and eosin; HPH: human primary hepatocyte; HRP: horseradish peroxidase; KEGG: Kyoto Encyclopedia of Genes and Genomes; KRT1: keratin 1; KRT5: keratin 5; KRT10: keratin 10; MAP1LC3/LC3: microtubule associated protein 1 light chain 3; MPHs: mouse primary hepatocytes; MSEA: metabolite set enrichment analysis; OCR: oxygen consumption rates; PBS: phosphate-buffered saline; PCA: principal component analysis; PLS-DA: partial least squares discriminant analysis; PTMs: post-translational modifications; ROS: reactive oxygen species; RSD: relative standard deviation; SD: standard deviation; SQSTM1/p62: sequestosome 1; SRB: sulforhodamine B; TBIL: total bilirubin; TUNEL: terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling.

Acetylated Vps1 initiates autophagy and regulates the sorting nexin dynamics essential for pathogenicity in .

Chen X, Chen X, Fang Z … +6 more , Long Y, Cai Y, Saddeeq Abubakar Y, Naqvi NI, Wang Z, Zheng W

Autophagy · 2026 May · PMID 42107010 · Publisher ↗

Macroautophagy/autophagy is a dynamic recycling process that maintains cellular homeostasis and is closely linked to fungal development and pathogenicity. However, the mechanisms underlying the maintenance of autophagy h... Macroautophagy/autophagy is a dynamic recycling process that maintains cellular homeostasis and is closely linked to fungal development and pathogenicity. However, the mechanisms underlying the maintenance of autophagy homeostasis remain largely unclear in phytopathogenic fungi. In this study, we identified the FgHat2-FgVps1-FgSnx4 module as a key regulator of autophagy homeostasis in . We show that the initiation of autophagy requires acetylation of the dynamin-like GTPase FgVps1 at lysine 216 by the histone acetyltransferase FgHat2. This modification promotes the interaction between FgVps1 and the autophagy protein FgAtg8 and facilitates the endosomal release of the sorting nexin FgSnx4. Released FgSnx4 is essential for directing FgAtg9 trafficking to the phagophore and for interacting with FgAtg8 through its N-terminal Atg8-family interacting motif (AIM), thereby ensuring proper modulation of FgAtg8 during autophagy. Together, these findings reveal an acetylation-dependent mechanism that coordinates autophagy, providing new insights into the regulation of autophagy in phytopathogenic fungi. AIM: Atg8-family interacting motif; ATG: autophagy related; CBB: Coomassie Brilliant Blue; CM: complete medium; CMAC: 7-amino-4-chloromethylcoumarin; Co-IP: co-immunoprecipitation; MM-N: minimal medium without nitrogen; PAS: phagophore assembly site; SNX: sorting nexin.

SINAT proteins modulate autophagic vesicle degradation by regulating V-ATPase subunit proteolysis in Arabidopsis.

Zhou S, Lin M, Xie R … +9 more , Huang D, Xie Z, Lu S, Wang Y, Xie L, Lin Q, Xiao S, Qi H, Qiu R

Autophagy · 2026 May · PMID 42107009 · Publisher ↗

Macroautophagy/autophagy is a process conserved across eukaryotes that maintains cellular homeostasis by delivering cellular components to the vacuole or lysosome for further breakdown and recycling. Although the molecul... Macroautophagy/autophagy is a process conserved across eukaryotes that maintains cellular homeostasis by delivering cellular components to the vacuole or lysosome for further breakdown and recycling. Although the molecular mechanisms regulating autophagosome formation have been extensively studied, those underlying the modulation of autophagic body degradation in plant cells remain unclear. Here, we determined that VAB1 (V-ATPase catalytic subunit B1), a direct target of SINAT (SEVEN IN ABSENTIA OF ARABIDOPSIS THALIANA), is involved in the modulation of autophagic body degradation in plants. SINAT physically associated with VAB1 and to regulate its ubiquitination and degradation in planta. Compared with the wild-type (WT), the mutants showed decreased tolerance to nutrient starvation and premature leaf senescence. Moreover, deletion of led to impaired starvation-induced autophagic vesicle degradation by disrupting V-ATPase activity mediated vacuolar acidification. Consistently, lysines K34 and K221 of VAB1 protein contributed to SINAT1-mediated ubiquitination, destabilization, and suppression of autophagy-associated nutrient starvation tolerance. Thus, our findings demonstrate that SINAT proteins are involved in autophagy regulation by modulating VAB1-mediated autophagic degradation in Arabidopsis.

The multifaceted regulation of autophagy protein ATG16L1 and its implications in human diseases.

Wei F, Liu Z, Yu X … +8 more , Sun Y, Zhao Y, Wang Y, Feng Z, Zhao X, Ke X, Yang A, Cui H

Autophagy · 2026 May · PMID 42107008 · Publisher ↗

ATG16L1 (autophagy related 16 like 1) is a core macroautophagy/autophagy protein essential for autophagosome formation. It also functions in non-canonical autophagy pathways such as LC3-associated phagocytosis (LAP) and... ATG16L1 (autophagy related 16 like 1) is a core macroautophagy/autophagy protein essential for autophagosome formation. It also functions in non-canonical autophagy pathways such as LC3-associated phagocytosis (LAP) and in other processes including immunity, inflammation, and membrane trafficking. This review synthesizes recent advances and proposes that ATG16L1 functions as a central molecular integrator governed by a multi-layered regulatory code. This framework includes genetic polymorphisms, transcriptional control, and diverse post-transcriptional and post-translational mechanisms. We detail how these regulatory layers collectively fine-tune ATG16L1 function in response to cellular stress. Dysregulation of this network contributes broadly to human diseases including inflammatory bowel disease, cancer, and neurodegenerative disorders. Notably, the functional impact of specific regulatory events is highly context dependent, a principle exemplified by the Crohn disease-associated T300A polymorphism. Deciphering this regulatory landscape and its crosstalk with both autophagy-dependent and autophagy-independent functions positions ATG16L1 as a pivotal node in cellular homeostasis and as an emerging therapeutic target. ATG: autophagy related; CASM: conjugation of Atg8-family proteins to single membranes; CCD: coiled-coil domain; CEBPA/CEBPα: CCAAT enhancer binding protein alpha; CHUK/IKKA: component of inhibitor of nuclear factor kappa B kinase complex; circRNA: circular RNA; CPT1A: carnitine palmitoyltransferase 1A; CREB: cAMP responsive element binding protein; CSNK2: casein kinase 2; FTO: FTO alpha-ketoglutarate dependent dioxygenase; GJA8/connexin 50: gap junction protein alpha 8; H/R: hypoxia-reoxygenation; HDAC: histone deacetylase; KAT2B/PCAF: lysine acetyltransferase 2B; KDM1A: lysine demethylase 1A; LAP: LC3-associated phagocytosis; lncRNA: long non-coding RNA; LRRK2: leucine rich repeat kinase 2; mA: N6-methyladenosine; MAP1LC3/LC3: microtubule associated protein 1 light chain 3; miRNA/MIR: microRNA; Mtb: ; ncRNA: non-coding RNA; PE: phosphatidylethanolamine; PI3K: phosphoinositide 3-kinase; PRKA/PKA: protein kinase cAMP-activated; PPP1: protein phosphatase 1; RAB33B: RAB33B, member RAS oncogene family; RB1CC1/FIP200: RB1 inducible coiled-coil 1; SETD7: SET domain containing 7, histone lysine methyltransferase; SQSTM1/p62: sequestosome 1; TNF/TNF-α: tumor necrosis factor; ULK: unc-51 like autophagy activating kinase; V-ATPase: vacuolar-type H-translocating ATPase; VDR: vitamin D receptor; WIPI2B: WD repeat domain, phosphoinositide interacting 2B; YTHDF2: YTH N6-methyladenosine RNA binding protein F2; ZDHHC7: zDHHC palmitoyltransferase 7.

-palmitoylation of ATG4B facilitates the deconjugation of LC3-II to promote autophagy.

Wang J, Zeng H, Wu W … +6 more , Yao J, Wang Y, Han J, Zou W, Li S, Yang A

Autophagy · 2026 May · PMID 42107007 · Publisher ↗

Macroautophagy/autophagy plays a critical role in maintaining cellular homeostasis. A defining characteristic of autophagy is the formation of the autophagosomes, which is regulated by a series of ATG (autophagy related)... Macroautophagy/autophagy plays a critical role in maintaining cellular homeostasis. A defining characteristic of autophagy is the formation of the autophagosomes, which is regulated by a series of ATG (autophagy related) proteins. ATG4B serves as a pivotal protein responsible for the cleavage of the precursor form of MAP1LC3/LC3 and the deconjugation of LC3-II, which is a prerequisite for the formation and expansion of phagophores, the precursors to autophagosomes. In the present study, we demonstrated that ATG4B undergoes -palmitoylation, in which palmitic acid is attached to the side chain of a cysteine residue. -palmitoylation of ATG4B is catalyzed by ZDHHC9 (zDHHC palmitoyltransferase 9), and reversed by ABHD17B (abhydrolase domain containing 17B, depalmitoylase). Interestingly, -palmitoylation of ATG4B at Cys89 is crucial for LC3-II deconjugation and , but not for proLC3 cleavage. In conclusion, our study reveals a crucial role of ATG4B -palmitoylation in the deconjugation of LC3-II in autophagy.: ABE: acyl-biotin exchange assay; ABHD17A: abhydrolase domain containing17A, depalmitoylase; Alk-C16: alkynyl palmitic acid; Alk-C18: alkynyl stearic acid; ATG: autophagy related; BafA: bafilomycin A; 2-BP: 2-bromopalmitate; co-IP: co-immunoprecipitation; ER: endoplasmic reticulum; GABARAP: GABA type A receptor-associated protein; HAM: hydroxylamine; HO: hydrogen peroxide; KO: knockout; LYPLA1/APT1: lysophospholipase 1; MAP1LC3/LC3: microtubule associated protein 1 light chain 3; NP-40: Nonidet P-40; PBS: phosphate-buffered saline; PE: phosphatidylethanolamine; proLC3: the precursor form of LC3; PTM: posttranslational modification; SDS: sodium dodecyl sulfate; SQSTM1/p62: sequestosome 1; TEM: transmission electron microscopy; WIPI2B: WD repeat domain, phosphoinositide interacting 2B; WT: wild-type; ZDHHC: zDHHC palmitoyltransferase.

When tau stalls the lysosome: decoupling trafficking and degradation in autophagy.

Karch CM, Mirfakhar FS

Autophagy · 2026 May · PMID 42093145 · Publisher ↗

Tauopathies are characterized by the accumulation of misfolded tau and lysosomal dysfunction, yet whether defects in the autophagy-lysosome pathway are causal or secondary remains unclear. Recent work using human iPSC-de... Tauopathies are characterized by the accumulation of misfolded tau and lysosomal dysfunction, yet whether defects in the autophagy-lysosome pathway are causal or secondary remains unclear. Recent work using human iPSC-derived neurons harboring the MAPT p.R406W mutation demonstrates that pathogenic tau is sufficient to disrupt lysosomal function upstream of tau accumulation. Tau species are differentially processed within lysosomes, with phosphorylated tau retained at the lysosomal membrane, consistent with a barrier to efficient cargo processing. Importantly, pharmacologic activation of autophagy restores degradative capacity and reduces tau burden without rescuing lysosomal motility, suggesting that trafficking and degradation represent separable axes of lysosomal biology. These findings position tau as an active disruptor of proteostasis and define a degradative bottleneck that shares features with lysosomal storage disorders. Together, this work reframes autophagy dysfunction in tauopathy as a modular defect with distinct therapeutic entry points.

ROS-driven mitophagy arrest mediates the anti-glioblastoma activity of Molephantin.

Ling Z, Li J, Wang G … +2 more , Zhang Y, Pan JP

Autophagy · 2026 May · PMID 42089469 · Publisher ↗

Mitophagy, the selective autophagic degradation of mitochondria, often acts as a pro-survival mechanism in tumor cells, including Glioblastoma (GBM), by clearing damaged mitochondria and mitigating oxidative stress. GBM... Mitophagy, the selective autophagic degradation of mitochondria, often acts as a pro-survival mechanism in tumor cells, including Glioblastoma (GBM), by clearing damaged mitochondria and mitigating oxidative stress. GBM is a highly aggressive brain tumor characterized by profound resistance to conventional therapies. Our recent study identified Molephantin (EM-5), a natural small molecule capable of crossing the blood-brain barrier, as a potent anti-GBM agent. Mechanistically, EM-5 triggers severe mitochondrial dysfunction and massive reactive oxygen species (ROS) production in GBM. Crucially, we discovered that EM-5 acts as a novel late-stage mitophagy inhibitor. It specifically blocks the fusion of mitophagosomes with lysosomes without affecting early autophagosome formation or lysosomal acidification. This ROS-driven fusion defect leads to the toxic accumulation of damaged mitochondria, thereby amplifying oxidative stress and driving GBM cells into apoptosis. Collectively, our work establishes that targeting late-stage mitophagy flux via ROS modulation is a valuable paradigm for the discovery and development of therapeutic agents against GBM.

SETDB1 enhances starvation-induced lipophagy by inhibiting mA-mediated mRNA decay via DDX5 methylation.

Wang W, Wang Y, Hou L … +9 more , Wei X, Guo W, Huang J, Tan J, Lu Q, Zhao Q, Ju Z, Li J, Zhou Q

Autophagy · 2026 May · PMID 42087801 · Publisher ↗

Lipophagy, a selective form of macroautophagy/autophagy, degrades lipid droplets (LDs) to provide energy and is implicated in metabolic disorders. The molecular mechanism underlying lipophagy induction remains incomplete... Lipophagy, a selective form of macroautophagy/autophagy, degrades lipid droplets (LDs) to provide energy and is implicated in metabolic disorders. The molecular mechanism underlying lipophagy induction remains incompletely understood. This study explored the role of SETDB1 in starvation-induced autophagy and lipophagy. We demonstrate that SETDB1 deficiency exacerbates starvation-induced hepatic lipid accumulation by inhibiting lipophagy. Mechanistically, starvation promotes ATM-mediated phosphorylation of SETDB1, which enhances its interaction with and methylation of the RNA helicase DDX5. In -knockout hepatocytes, hypomethylation of DDX5 facilitates the formation of the DDX5-METTL3-METTL14 complex, increasing mA modification of and mRNAs. This modification promoted YTHDF2-mediated decay of these transcripts, thereby inhibiting starvation-induced autophagy and lipophagy. Furthermore, administration of the SETDB1 activator -59 significantly enhances lipophagy and attenuates starvation-induced hepatic steatosis. Collectively, our findings reveal a novel pathway in which SETDB1 deficiency drives mA-mediated mRNA degradation to suppress lipophagy, thereby contributing to hepatic steatosis. AA free: amino acid deprivation; ATG14: autophagy related 14; ATG5: autophagy related 5; ATG7: autophagy related 7; ATM: ATM serine/threonine kinase; Baf A1: bafilomycin A; DDX5: DEAD-box helicase 5; FASN: fatty acid synthase; LAMP1: lysosome associated membrane protein 1; LAMP2A: lysosome associated membrane protein 2A; LIPE/HSL: lipase E, hormone sensitive type; MAP1LC3B/LC3B: microtubule associated protein 1 light chain 3 beta; MAP3K5/ASK1: mitogen-activated protein kinase kinase kinase 5; METTL3: methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit; METTL14: methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit; MGLL/MGL: monoglyceride lipase; OA: oleic acid; OSBPL8/ORP8: oxysterol binding protein like 8; PLIN2: perilipin 2; PNPLA2/ATGL: patatin like domain 2, triacylglycerol lipase; SETDB1: SET domain bifurcated histone lysine methyltransferase 1; TFEB: transcription factor EB; TP53/p53: tumor protein p53; ULK1: unc-51 like autophagy activating kinase 1; YTHDF2: YTH N6-methyladenosine RNA binding protein F2.

RYR:ATP6V0A1 complexes couple ER-lysosome contact sites to dynamic autophagy control.

Loncke J, Callens M, Bultynck G … +1 more , Vervliet T

Autophagy · 2026 May · PMID 42087556 · Publisher ↗

Ryanodine receptors (RYRs) are ER-resident Ca-release channels enriched in excitable cells, including neurons. RYR hyperactivity is implicated in early pathogenesis of disorders such as Alzheimer's disease (AD), which is... Ryanodine receptors (RYRs) are ER-resident Ca-release channels enriched in excitable cells, including neurons. RYR hyperactivity is implicated in early pathogenesis of disorders such as Alzheimer's disease (AD), which is associated with impaired autophagy. We recently uncovered a mechanism linking RYR activity to lysosome availability for autophagy. RYRs localize to ER-lysosome contact sites via direct binding to ATP6V0A1, a V-ATPase subunit that also suppresses RYR-mediated Ca release. In human iPSC-derived cortical neurons, spontaneous RYR activity promotes lysosomal secretion, depleting the intracellular lysosomal pool and inhibiting autophagic flux. RYR inhibition promotes ERlysosome contacts, limits lysosomal secretion, and restores lysosome availability for autophagosome fusion and cargo degradation (including APP). Conversely, disrupting the RYR:ATP6V0A1 interaction using a RYR-derived protein fragment serving as a "decoy" for ATP6V0A1 evokes RYR hyperactivity and stimulates lysosomal secretion. In this Punctum, we discuss how this RYR2:ATP6V0A1 "contact-site hub" may be perturbed in disease and highlight open questions on how lysosomes decode RYR-derived Ca signals.

Correction.

Autophagy · 2026 May · PMID 42087454 · Publisher ↗

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PRKN/parkin-mediated control of SNCA (synuclein alpha) and chaperone-mediated autophagy are defective in cellular, mice models and Parkinson disease-affected brains.

Ramos Dos Santos L, Duplan E, Debord J … +8 more , Fremont G, Minniti J, Lauritzen I, Mutez E, Leghay C, Chartier-Harlin MC, Checler F, Alves da Costa C

Autophagy · 2026 May · PMID 42083315 · Publisher ↗

Pathological accumulation of toxic SNCA species and loss of E3-ligase function of PRKN are two key features observed in Parkinson disease (PD). Here, we established the contribution of an E3-ligase-independent transcript... Pathological accumulation of toxic SNCA species and loss of E3-ligase function of PRKN are two key features observed in Parkinson disease (PD). Here, we established the contribution of an E3-ligase-independent transcriptional function of PRKN in SNCA regulation. PRKN depletion decreased and (glucosylceramidase beta 1) mRNA levels and reduced CMA-driven degradation of SNCA, thereby triggering the accumulation of its phosphorylated aggregation-prone toxic species. We established that PRKN controls the CMA player LAMP2A but not HSPA8/HSC70 in isolated lysosomal fractions prepared from human neuronal and mouse fibroblastic cells. Further, we showed that PRKN-associated regulation of LAMP2 is isoform specific. We showed that PRKN-mediated control of SNCA, GBA1 and LAMP2A occurs and is impaired in the paraquat-treated PD mice model. We showed that the levels of phosphorylated SNCA and PRKN are correlated in sporadic PD human brain samples and that fibroblasts of patients carrying pathogenic mutations exhibit impaired CMA activity. Our study decrypts a new molecular mechanism linking three PD major therapeutic targets. It enriches the portfolio of transcriptional targets of PRKN and establishes PRKN as a novel CMA regulator. Further, it shows that PRKN controls both direct and indirect (GBA1-dependent) transcriptional regulation of . This novel molecular cascade opens potential new avenues in PD treatment. ChIP: chromatin immunoprecipitation; CMA: chaperone-mediated autophagy; ΔPkPr: deleted -RE promoter; GBA1: glucosylceramidase beta 1; HAP1: human haploid cell; : human haploid control cells; : human haploid invalidated for cells; HSPA8/HSC70: heat shock protein family A (Hsp70) member 8; LAMP2A: lysosomal associated membrane protein 2A; MEF: mouse embryonic fibroblast; : MEF and mice control; : MEF and mice knockout; PD: Parkinson disease; PQ: paraquat; PRKN: parkin RBR E3 ubiquitin protein ligase; -RE: responsive element; : PRKN control; : -depleted; SNCA: synuclein alpha; SNCA [M]: monomeric synuclein alpha; SNCA [O]: oligomeric synuclein alpha; SNCA p-S129: phosphorylated synuclein alpha, SPD: sporadic Parkinson disease; TF: transcription factor; TH: tyrosine hydroxylase; : wild-type promoter.

Advancing targeted protein degradation: pLIRTAC's role in glioma and CAR-T cell therapy.

Lei K, Li Y, Zhou Z … +5 more , Li J, Huang L, Liu W, Huang K, Zhu X

Autophagy · 2026 May · PMID 42080372 · Publisher ↗

The rapid development of targeted protein degradation (TPD) has shown profound effects on disease treatment. Precise and effective targeted degradation tools that target endogenous proteins are essential to accelerate ad... The rapid development of targeted protein degradation (TPD) has shown profound effects on disease treatment. Precise and effective targeted degradation tools that target endogenous proteins are essential to accelerate advances in treatment methods. Selective macroautophagy/autophagy relies on the activity of related receptors to achieve the degradation of specific intracellular components in lysosomes, but the methodology of selective autophagy for tumor therapy and chimeric antigen receptor (CAR)-T cell modification is yet unexplored. Here, we developed a peptide-based LC3-interacting region-targeting chimera (pLIRTAC) that accurately and efficiently targeted the degradation of AKT1 for glioma treatment. pLIRTAC could also inhibit the development of tumor cells by delivery after purification. For CAR-T cell therapy, pLIRTAC could significantly improve the efficacy of CAR-T cell-targeted lysis of tumor cells both and . pLIRTAC binds to autophagy-associated proteins through LC3-interacting region (LIR) motifs and to target proteins through protein-targeting short peptides, and targets the protein of interest (POI) based on the selective autophagy lysosomal pathway. pLIRTAC has been remarkably successful both and , providing a robust and effective tool for the control of endogenous abnormal proteins in cells, and can potentially further expand the therapeutic application of TPD technology. ATG8s: mammalian Atg8 (autophagy related 8)-family proteins; Baf-A1: bafilomycin A; CAR: chimeric antigen receptor; CQ: chloroquine; CRISPR: clustered regularly interspaced short palindromic repeats; EBSS: Earle's balanced salt solution; LIR: LC3-interacting region; 3 MA: 3-methyladenine; MFI: mean fluorescence intensity; pLIRTAC: peptide-based LC3-interacting region-targeting chimera; POI: protein of interest; PROTAC: proteolysis-targeting chimera; SARS: selective autophagy receptors; TPD: targeted protein degradation.

Turning adaptive resistance into vulnerability: AUTAC-Mediated degradation of Mcl1.

Elshazly AM, Radhakrishnan SK

Autophagy · 2026 May · PMID 42080337 · Full text

Proteasome inhibition remains the frontline therapy in multiple myeloma, yet its efficacy is attenuated by adaptive stress responses. Central to these is the transcription factor NRF1, which transcriptionally upregulates... Proteasome inhibition remains the frontline therapy in multiple myeloma, yet its efficacy is attenuated by adaptive stress responses. Central to these is the transcription factor NRF1, which transcriptionally upregulates proteasome subunits and components of the autophagy-lysosomal machinery, restoring proteostasis and sustaining tumor cell survival. The anti-apoptotic protein Mcl1 has independently emerged as a dominant mediator of resistance to proteasome inhibitors. In our recent work, we report a first-in-class Mcl1-targeting autophagy-targeting chimera (AUTAC) that selectively degrades Mcl1 via the lysosomal pathway through K63-linked ubiquitination by TRAF6 and UBC13, and recognition by the cargo receptor p62/SQSTM1. Proteasome inhibition with carfilzomib markedly potentiates AUTAC activity, and this potentiation is abolished in NRF1-deficient cells, establishing NRF1 as the licensing factor that couples proteotoxic stress to enhanced lysosomal targeted protein degradation. The combination produces synergistic tumor cell death across proteasome inhibitor-sensitive and resistant multiple myeloma and lung cancer models and significantly suppresses tumor growth in a U266B1 multiple myeloma xenograft model. These findings reframe cytoprotective autophagy not as a resistance liability to be inhibited, but as an inducible degradation capacity that can be redirected to eliminate oncogenic survival factors, suggesting a generalizable strategy for amplifying lysosomal targeted protein degradation through controlled proteostasis stress.

The autophagy-inhibitory tissue hormone DBI/ACBP is essential for glucocorticoid-induced immunosuppression.

Shen Z, Pan H, Zhao L … +6 more , Liu P, Kepp O, Maiuri MC, Ma Y, Martins I, Kroemer G

Autophagy · 2026 May · PMID 42070152 · Publisher ↗

Systemic administration of glucocorticoids (GCs) has immunosuppressive effects that involve the upregulation of the transcription factor TSC22D3 in dendritic cells (DCs), thereby reducing their capacity for antigen prese... Systemic administration of glucocorticoids (GCs) has immunosuppressive effects that involve the upregulation of the transcription factor TSC22D3 in dendritic cells (DCs), thereby reducing their capacity for antigen presentation to T lymphocytes. Recently, we found that this effect is not mediated by direct action on the GC receptor in DCs but rather involves an indirect signaling circuitry. Indeed, GCs act on the GC receptor expressed by many cell types to cause the upregulation and release of the tissue hormone DBI/ACBP (diazepam binding inhibitor, acyl-CoA binding protein). DBI/ACBP, which is an inhibitor of macroautophagy/autophagy, then acts on the benzodiazepine-binding site of the gamma-aminobutyric acid type A receptor (GABAR) to elicit the upregulation of TSC22D3. The indirect, DBI/ACBP-dependent upregulation of TSC22D3 by GCs is observed both in vivo (mice) and in vitro, in murine splenocytes and bone marrow-derived DCs, as well as in human peripheral blood mononuclear cells and monocyte-derived DCs. Inhibition of human mixed lymphocyte reactions (confronting DCs and lymphocytes from distinct donors) by DCs is reduced by DBI/ACBP neutralizing antibodies. Similarly, the suppression of antitumor immune responses (elicited by vaccination with dying cancer cells, immunogenic chemotherapy or PDCD1/PD-1 blockade) by GCs is reversed by DBI/ACBP neutralization. Epistatic experiments indicate that knockout of in DCs and inhibition of DBI/ACBP act on the pathway to reverse GC-mediated inhibition of cancer immunosurveillance. Of note, the benzodiazepine diazepam restores GC-induced immunosuppression when DBI/ACBP is inhibited. Altogether, these findings support a role for the DBI/ACBP-GABAR system in immunosuppression by GCs.

DEHP disrupts lipid metabolism via autophagy hyperactivation and mitochondrial dysfunction.

Yu SY, Liu Q, Gu YH … +13 more , Han WZ, Han AJ, Xiong J, Li TZ, Hu QS, Gang FY, Zhao CQ, Feng T, Tian J, Miao X, Yu XJ, Xie NB, Yuan BF

Autophagy · 2026 May · PMID 42070151 · Publisher ↗

Di(2-ethylhexyl) phthalate (DEHP) is a widely used industrial plasticizer, raising global concerns due to its potential endocrine-disrupting effects and environmental persistence. Human exposure to DEHP primarily occurs... Di(2-ethylhexyl) phthalate (DEHP) is a widely used industrial plasticizer, raising global concerns due to its potential endocrine-disrupting effects and environmental persistence. Human exposure to DEHP primarily occurs through the ingestion of contaminated food and water, inhalation of airborne particles, and dermal contact with products containing DEHP. Understanding the toxicological mechanisms of DEHP is essential for evaluating its health risks and developing effective strategies to mitigate its adverse effects. In this study, we conducted long-term exposure experiments to DEHP using both an animal model and in vitro system to investigate the complex interplay among DNA methylation, hyperactivation of macroautophagy/autophagy, mitochondrial dysfunction, and lipid accumulation induced by DEHP. The results revealed that DEHP exposure induced the degradation of DNMT1 (DNA methyltransferase 1) by enhancing its interaction with the autophagy-related protein SQSTM1 (sequestosome 1). DNMT1 degradation resulted in decreased methylation of the promoter regions of genes associated with autophagosome formation, subsequently increasing their expression. The resulting demethylation excessively activated autophagy, contributing to mitochondrial dysfunction and lipid accumulation in the liver. This study uncovered a previously unrecognized interplay among hyperactivation of autophagy, mitochondrial dysfunction, and lipid accumulation in the context of DEHP exposure. These findings enhanced our understanding of DEHP's toxicity and underscored concerns about the long-term health effects of environmental pollutants, particularly regarding metabolic diseases. ATG5:autophagy related 5; ATG16L1: autophagy related 16 like 1; BECN1:beclin 1; COX4/COXIV: cytochrome c oxidase subunit 4; BS-seq:bisulfite sequencing; DCFH-DA: 2',7'-dichlorodihydrofluoresceindiacetate; DEHP: di(2-ethylhexyl) phthalate; DNMT1: DNAmethyltransferase 1; DNMT3A: DNA methyltransferase 3A; FABP4: fattyacid binding protein 4; FASN: fatty acid synthase; LPL: lipoproteinlipase; MAP1LC3/LC3: microtubule associated protein1 light chain 3; NAFLD: nonalcoholic fatty liver disease; NR1H3:nuclear receptor subfamily 1 group H member 3; PPARG: peroxisomeproliferator activated receptor gamma; RB1CC1: RB1 induciblecoiled-coil 1; SQSTM1: sequestosome 1; SREBF2: sterol regulatoryelement binding transcription factor 2; VDAC1: voltage dependentanion channel 1.

RPS6KA3/RSK2-mediated phosphorylation of DRAM2 promotes lysosomal targeting and autophagic flux in melanoma.

Lee GE, Nam SB, Moon E … +10 more , Huh YH, Park HS, Na S, Kim JY, Han EH, Cho H, Choi JH, Cho YY, Bang G, Lee CJ

Autophagy · 2026 May · PMID 42059423 · Publisher ↗

Macroautophagy/autophagy is a critical process for maintaining cellular homeostasis and has emerging implications in cancer biology. DRAM2 (DNA damage regulated autophagy modulator 2), a transmembrane protein enriched at... Macroautophagy/autophagy is a critical process for maintaining cellular homeostasis and has emerging implications in cancer biology. DRAM2 (DNA damage regulated autophagy modulator 2), a transmembrane protein enriched at lysosomal membranes, has been implicated in autophagy regulation; however, the upstream mechanisms governing its trafficking and function remain unclear. In this study, we identified RPS6KA3/RSK2, a stress-responsive kinase downstream of the MAPK pathway, as a novel upstream kinase of DRAM2. RPS6KA3/RSK2 interacted with and phosphorylated DRAM2 at Ser263 within its cytosolic tail. This phosphorylation was required for AP3D1/AP-3-dependent trafficking of DRAM2 to the late endosomal-lysosomal pathway, thereby facilitating autolysosome formation and sustaining autophagic flux. In contrast, the non-phosphorylatable DRAM2 mutant failed to bind AP3D1/AP-3, exhibited defective lysosomal trafficking, and was partially redistributed toward plasma membrane-proximal compartments, where it enhanced exosome secretion. Bioinformatic analyses revealed a strong positive correlation between RPS6KA3/RSK2 and DRAM2 expression in melanoma tissues, and elevated DRAM2 expression was associated with poor patient prognosis. Depletion of RPS6KA3/RSK2 or DRAM2 impaired autophagic flux and inhibited melanoma cell proliferation. Similarly, expression of the DRAM2 mutant suppressed melanoma progression in vitro and in vivo by disrupting autophagy. Moreover, DRAM2 protein levels were elevated in skin cancer tissues compared to normal tissues. Collectively, our findings uncover a phosphorylation-dependent trafficking switch that bifurcates DRAM2 function between autophagy and exosome secretion, and establish the RPS6KA3/RSK2-DRAM2 axis as a critical regulator of melanoma progression. This signaling pathway may represent a promising therapeutic target for autophagy-associated malignancies. AGC: protein kinase A, G, and C families; AP-3: adaptor protein 3; CD: cytosolic domain; CSNK2/CK2: casein kinase 2; co-IP: co-immunoprecipitation; CQ: chloroquine; CREB: cAMP responsive element binding protein; CTKD: C-terminal kinase domain; DRAM2: DNA damage regulated autophagy modulator 2; EBSS: Earle's balanced salt solution; ESCRT: endosomal sorting complexes required for transport; GEPIA: gene expression profiling interactive analysis; GPS: global positioning system; GRK7: G protein-coupled receptor kinase 7; GSK3B: glycogen synthase kinase 3 beta; IP-MS: immunoprecipitation-mass spectrometry; LAMP1: lysosome associated membrane protein 1; LAMP2: lysosome associated membrane protein 2; MAP1LC3B/LC3B: microtubule associated protein 1 light chain 3 beta; MAPK: mitogen-activated protein kinase; MVB: multivesicular body; NTA: nanoparticle tracking analysis; NTKD: N-terminal kinase domain; PI4K2: phosphatidylinositol 4-kinase type 2 alpha; PRKAA2: protein kinase AMP-activated catalytic subunit alpha 2; RPS6KA3/RSK2: ribosomal protein S6 kinase A3; SKCM: skin cutaneous melanoma; SQSTM1: sequestosome 1.

Cardiac fibroblast-derived CCN1 aggravates diabetic cardiomyopathy through ITGAV-ITGB1/integrin αvβ1-mediated autophagy inhibition.

Hu BA, Zhang L, Song M … +9 more , Kong YR, Jiao YQ, Jia X, Zhu P, Li YL, Ti Y, Zhang W, Wang ZH, Zhong M

Autophagy · 2026 May · PMID 42056922 · Publisher ↗

Cardiac fibrosis is a defining pathological feature of diabetic cardiomyopathy (DCM), and excessive activation of cardiac fibroblasts plays a critical role in regulating cardiomyocyte function through paracrine signaling... Cardiac fibrosis is a defining pathological feature of diabetic cardiomyopathy (DCM), and excessive activation of cardiac fibroblasts plays a critical role in regulating cardiomyocyte function through paracrine signaling. CCN1 (cellular communication network factor 1), an extracellular matrix protein involved in intercellular communication, has been suggested to influence cardiac remodeling, although its specific impact on cardiomyocytes in DCM has remained unclear. In this study, we found that CCN1 expression was markedly elevated in cardiac tissues from DCM mouse models and in insulin-resistant cell models, with fibroblasts serving as the primary source. Proteomic analysis and co-culture experiments demonstrated that CCN1 suppressed cardiomyocyte macroautophagy/autophagy. To determine its role in vivo, we generated fibroblast-specific knockout mice and established a DCM model, demonstrating that deletion ameliorated cardiac dysfunction and restored autophagic activity. We further identified ITGAV-ITGB1/integrin αvβ1 as the receptor mediating CCN1 signaling in cardiomyocytes. Molecular dynamics simulations and co-immunoprecipitation experiments confirmed that CCN1 engaged ITGAV-ITGB1/integrin αvβ1 through its cysteine-knot-containing (CT) domain. Mechanistically, this interaction activated the downstream PTK2/FAK-MTOR signaling pathway, leading to inhibition of cardiomyocyte autophagy. Together, these findings reveal a previously unrecognized fibroblast-cardiomyocyte signaling axis in which fibroblast-derived CCN1 drives DCM progression by suppressing autophagy through ITGAV-ITGB1/integrin αvβ1-dependent signaling. This work provides mechanistic insight into the pathogenesis of DCM and identifies CCN1 as a potential therapeutic target for mitigating disease onset and progression.: AAV9: adeno-associated virus serotype 9; ADGRE1/EMR1/F4/80: adhesion G protein-coupled receptor E1; BafA1: bafilomycin A; BSA: bovine serum albumin; C8: compound 8; CCN1: cellular communication network factor 1; CF: cardiac fibroblast; CSA: cross-sectional area; DCM: diabetic cardiomyopathy; EIF4EBP1: eukaryotic translation initiation factor 4E binding protein 1; ELISA: enzyme-linked immunosorbent assay; HE: hematoxylin and eosin; HFD: high-fat diet; HG: high glucose; IR: insulin resistance; MAP1LC3/LC3: microtubule associated protein 1 light chain 3; MD: molecular dynamics; MTOR: mechanistic target of rapamycin kinase; NRCM: neonatal rat cardiomyocyte; PDGFRA: platelet derived growth factor receptor alpha; PECAM1/CD31: platelet and endothelial cell adhesion molecule 1; PTK2/FAK: protein tyrosine kinase 2; PTPRC/CD45: protein tyrosine phosphatase receptor type C; RPS6KB1: ribosomal protein S6 kinase B1; S100A4/FSP1: S100 calcium binding protein A4; SQSTM1/p62: sequestosome 1; STZ: streptozotocin; TUNEL: terminal deoxynucleotidyl transferase-mediated dUTP-biotin nick end labeling; WGA: wheat germ agglutinin.
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