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Genesis [JOURNAL]

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Tumor dormancy: EMT beyond invasion and metastasis.

Aouad P, Quinn HM, Berger A … +1 more , Brisken C

Genesis · 2024 Feb · PMID 37776086 · Publisher ↗

More than two-thirds of cancer-related deaths are attributable to metastases. In some tumor types metastasis can occur up to 20 years after diagnosis and successful treatment of the primary tumor, a phenomenon termed lat... More than two-thirds of cancer-related deaths are attributable to metastases. In some tumor types metastasis can occur up to 20 years after diagnosis and successful treatment of the primary tumor, a phenomenon termed late recurrence. Metastases arise from disseminated tumor cells (DTCs) that leave the primary tumor early on in tumor development, either as single cells or clusters, adapt to new environments, and reduce or shut down their proliferation entering a state of dormancy for prolonged periods of time. Dormancy has been difficult to track clinically and study experimentally. Recent advances in technology and disease modeling have provided new insights into the molecular mechanisms orchestrating dormancy and the switch to a proliferative state. A new role for epithelial-mesenchymal transition (EMT) in inducing plasticity and maintaining a dormant state in several cancer models has been revealed. In this review, we summarize the major findings linking EMT to dormancy control and highlight the importance of pre-clinical models and tumor/tissue context when designing studies. Understanding of the cellular and molecular mechanisms controlling dormant DTCs is pivotal in developing new therapeutic agents that prevent distant recurrence by maintaining a dormant state.

Evidences of differential methylation in the genome during development in the cactophilic Drosophila species.

Santos AS, Ramos ES, Valente-Gaiesky VLS … +2 more , de Melo Sene F, Manfrin MH

Genesis · 2024 Feb · PMID 37750176 · Publisher ↗

DNA methylation with 5-methylcytosine (5mC) has been reported in the genome of several eukaryotes, with marked differences between vertebrates and invertebrates. DNA methylation is poorly understood as its role in evolut... DNA methylation with 5-methylcytosine (5mC) has been reported in the genome of several eukaryotes, with marked differences between vertebrates and invertebrates. DNA methylation is poorly understood as its role in evolution in insects. Drosophila gouveai (cluster Drosophila buzzatii) presents larvae that develop obligatorily in necrotic tissues of cacti in nature, with the distribution of populations in South America, and plasticity of phenotypes in insect-plant interaction. We characterize organisms at developmental stages and analyze variations at multiple methylation-sensitive loci in pupae, and adult flies using methylation sensitive amplification polymorphism. We obtained 326 loci with CCGG targets in the genome of D. gouveai. Genomic regions with molecular lengths from 100 to 700 pb were most informative about methylation states. Multiple loci show differences in methylation-sensitive sites (MSL) concerning developmental stages, such as in pupae (MSL = 40), female reproductive tissue (MSL = 76), and male reproductive tissues (MSL = 58). Our results are the first evidence of genome-wide methylation in D. gouveai organisms.

The story of my research with ascidians.

De Bernardi F

Genesis · 2023 Nov · PMID 37743676 · Publisher ↗

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V. K. Meenakshi: The first lady of ascidian research in India. Active: 1994-present.

Mondal J

Genesis · 2023 Nov · PMID 37735943 · Publisher ↗

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"Beyond transcription: How post-transcriptional mechanisms drive neural crest EMT".

Guzman-Espinoza M, Kim M, Ow C … +1 more , Hutchins EJ

Genesis · 2024 Feb · PMID 37735882 · Full text

The neural crest is a stem cell population that originates from the ectoderm during the initial steps of nervous system development. Neural crest cells delaminate from the neuroepithelium by undergoing a spatiotemporally... The neural crest is a stem cell population that originates from the ectoderm during the initial steps of nervous system development. Neural crest cells delaminate from the neuroepithelium by undergoing a spatiotemporally regulated epithelial-mesenchymal transition (EMT) that proceeds in a coordinated wave head-to-tail to exit from the neural tube. While much is known about the transcriptional programs and membrane changes that promote EMT, there are additional levels of gene expression control that neural crest cells exert at the level of RNA to control EMT and migration. Yet, the role of post-transcriptional regulation, and how it drives and contributes to neural crest EMT, is not well understood. In this mini-review, we explore recent advances in our understanding of the role of post-transcriptional regulation during neural crest EMT.

Signals, grids, and geometry: In pursuit of understanding cell fate switches.

Hudson C

Genesis · 2023 Nov · PMID 37715353 · Publisher ↗

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Diversity and distribution of ascidians.

Stefaniak LM

Genesis · 2023 Nov · PMID 37715351 · Publisher ↗

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Regulatory mechanisms for sperm chemotaxis and flagellar motility.

Shiba K

Genesis · 2023 Nov · PMID 37700488 · Publisher ↗

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Correlation between E-cadherin/β-catenin, Vimentin expression, clinicopathologic features and drug resistance prediction in naïve prostate cancer: A molecular and clinical study.

Said R, Hernández-Losa J, Derouiche A … +6 more , Moline T, de Haro RSL, Zouari S, Blel A, Rammeh S, Ouerhani S

Genesis · 2024 Feb · PMID 37649322 · Publisher ↗

Although epithelial-mesenchymal markers play an important role in prostate cancer (PC), further research is needed to better understand their utility in diagnosis, cancer progression prevention, and treatment resistance... Although epithelial-mesenchymal markers play an important role in prostate cancer (PC), further research is needed to better understand their utility in diagnosis, cancer progression prevention, and treatment resistance prediction. Our study included 111 PC patients who underwent transurethral resection, as well as 16 healthy controls. Reverse transcription-quantitative polymerase chain reaction (RT-qPCR) was used to examine the expression of E-cadherin, β-catenin, and Vimentin. We found that E-cadherin and β-catenin were underexpressed in primary PC tissues. E-cadherin expression was found to be inversely associated with prostate-specific antigen progression (PSA-P; serum marker of progression; p = 0.01; |r| = 0.262). Furthermore, the underexpression of two markers, E-cadherin and β-catenin, was found to be associated with advanced tumor stage and grade (p < 0.05). On the other hand, Vimentin was overexpressed in PC patients with a fold change of 2.141, and it was associated with the diagnosis, prognosis, and prediction of treatment resistance to androgen deprivation therapy (p = 0.002), abiraterone-acid (p = 0.001), and taxanes (p = 0.029). Moreover, the current study highlighted that poor survival could be significantly found in patients who progressed after primary surgery, did not use drugs, and expressed these genes aberrantly. In Cox regression multivariate analysis (p < 0.05), a positive correlation between the Vimentin marker and coronary heart disease in PC patients was identified (p = 0.034). In summary, the present study highlights the diagnostic (p < 0.001), prognostic (p < 0.001), and therapeutic potential of Vimentin in primary PC (p < 0.05), as well as its implications for cardiovascular disease. Furthermore, we confirm the potential prognostic value of E-cadherin and β-catenin.

Beryl Iris Brewin (1910-1999)-Accomplished New Zealand scientist and promoter of marine science.

Wilson MJ

Genesis · 2023 Nov · PMID 37649313 · Publisher ↗

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The colonial tunicate Botryllus schlosseri: A key species for evolutionary developmental studies.

Manni L

Genesis · 2023 Nov · PMID 37641508 · Publisher ↗

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A gene regulatory system that directs gene expression at the 32-cell stage.

Tokuoka M

Genesis · 2023 Nov · PMID 37641459 · Publisher ↗

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Gretchen Lambert: taxonomist, explorer, and historian of the ascidian community. Active: 1968-present.

Nydam ML

Genesis · 2023 Nov · PMID 37605464 · Publisher ↗

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Ascidian evolution and ecology.

Nydam ML

Genesis · 2023 Nov · PMID 37583358 · Publisher ↗

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Building hearts for undergraduate research with tunicates.

Evans Anderson HJ

Genesis · 2023 Nov · PMID 37583351 · Publisher ↗

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A temporally-restricted pattern of endothelial cell collagen 4 alpha 1 expression during embryonic development determined with a novel knockin Col4a1-P2A-eGFP mouse line.

Lartey NL, van der Ent M, Alonzo R … +2 more , Chen D, King PD

Genesis · 2024 Feb · PMID 37501352 · Full text

Classical collagen type IV comprising of a heterotrimer of two collagen IV alpha 1 chains and one collagen IV alpha 2 chain is the principal type of collagen synthesized by endothelial cells (EC) and is a major constitue... Classical collagen type IV comprising of a heterotrimer of two collagen IV alpha 1 chains and one collagen IV alpha 2 chain is the principal type of collagen synthesized by endothelial cells (EC) and is a major constituent of vascular basement membranes. In mouse and man, mutations in genes that encode collagen IV alpha 1 and alpha 2 result in vascular dysfunction. In addition, mutations in genes that encode the Ephrin receptor B4 (EPHB4) and the p120 Ras GTPase-activating protein (RASA1) that cause increased activation of the Ras mitogen-activated protein kinase (MAPK) signaling pathway in EC result in vascular dysfunction as a consequence of impaired export of collagen IV. To understand the pathogenesis of collagen IV-related vascular diseases and phenotypes it is necessary to identify at which times collagen IV is actively synthesized by EC. For this purpose, we used CRISPR/Cas9 targeting in mice to include immediately after the terminal Col4a1 codon a sequence that specifies a P2A peptide followed by enhanced green fluorescent protein (eGFP). Analysis of eGFP expression in Col4a1-P2A-eGFP mice revealed active embryonic EC synthesis of collagen IV alpha 1 through mid to late gestation followed by a sharp decline before birth. These results provide a contextual framework for understanding the basis for the varied vascular abnormalities resulting from perturbation of EC expression and export of functional collagen IV.

The molecular basis of ascidian whole body regeneration.

Wilson MJ

Genesis · 2023 Nov · PMID 37452396 · Publisher ↗

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Ascidians and their microbial symbionts.

López-Legentil S

Genesis · 2023 Nov · PMID 37452390 · Publisher ↗

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